PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G412900.1
Common NameB456_009G412900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 253aa    MW: 27533.8 Da    PI: 7.1438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G412900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014170192123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  Fs+   L  H+r+H
  Gorai.009G412900.1 170 HECSICGAEFSSGQALGGHMRRH 192
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-10100125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-9100123No hitNo description
PROSITE profilePS501579.182101128IPR007087Zinc finger, C2H2
SMARTSM003550.45101123IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-9165192No hitNo description
Gene3DG3DSA:3.30.160.607.9E-4166192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.0E-13169193IPR007087Zinc finger, C2H2
SMARTSM003550.01170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868170197IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MEGQQEVVLC KDELQIIKGK RTKRPRPVSS LTLAIASTTT TSTGGESRTS NDDSSITTAV  60
EPPESCWEDE ENMAYCLMLL AQGQTRKPSE PTGKTAGMNV HQCKTCNRCF PSFQALGGHR  120
ASHKKPKLHS EENTKRLKLV KEDDDMNTTL SLQITNKAPA LCNGTKSKVH ECSICGAEFS  180
SGQALGGHMR RHRTSTNATT TVGTSTSAET EDLSSNKPTT VLQLDLNLPA PEDDRHNESN  240
FPFTQTINLC YC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442995.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D2U2Z50.0A0A0D2U2Z5_G
STRINGVIT_08s0007g04770.t011e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2498034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-44C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]